Post-doctoral Researcher in Global Genomic Surveillance Infrastructure (80 – 100%)

The Swiss Tropical and Public Health Institute (Swiss TPH) is a world-leading institute in global health with a particular focus on low- and middle-income countries. Associated with the University of Basel, Swiss TPH combines research, education and services at local, national and international levels. 950 people from 95 nations work at Swiss TPH focusing on infectious and non-communicable diseases, environment, society and health as well as health systems and interventions.

The Department of Medical Parasitology and Infection Biology (MPI) investigates the biology and transmission of pathogens. Findings from this research inform the development of new diagnostics, treatments, and vaccines against malaria, tuberculosis, schistosomiasis, Chagas and other neglected tropical diseases.

Post-doctoral Researcher in Global Genomic Surveillance Infrastructure (80 – 100%)

Are you excited by the idea of building global infrastructure to make pathogen sequencing more accessible, interpretable, and equitable? This post-doctoral position offers a unique opportunity to work at the intersection of two world-leading efforts:

• ARTIC2, the latest evolution of the renowned ARTIC project, enabling affordable, portable, and real-time genetic sequencing in low-resource settings
• Pathoplexus, a pioneering open-source platform redefining how viral sequence data is shared and governed globally, powered by the modular, federated backend database software Loculus

This is a computational position focused on the research, development, and application of systems for pathogen genome data curation, analysis, and sharing. You will join the Epidemiology & Virus Evolution (EVE) group at Swiss TPH, working alongside international leaders in open science, genomic epidemiology, and viral phylogenetics.

How to apply:

Please submit your application online.

• CV, including publication list
• Motivational letter, including your background & experience, and what you envision you could bring to the project
• Names and contact information (email ) of 2-3 references
• Degrees achieved

Closing date for applications is 31 August 2025, but applications will be considered as soon as submitted.

We particularly encourage applications from underrepresented backgrounds in computational biology. Together, we can make the world a healthier place. We look forward to receiving your application.

Please note that we can only accept applications via our online recruiting tool. As long as the position is online on our company website, we are open for new applications. Applications via e-mail or external recruiter will not be considered.

Life in Basel/Allschwil/Switzerland:

Quality of life in Switzerland is consistently ranked as one of the highest in the world. Switzerland is a safe, stable country with relatively high pay, a temperate climate, and beautiful and accessible nature and mountains.

The Basel area is truly international, with many foreign national residents due to the universities and pharmaceutical industry. It boasts an international airport, almost 40 museums, numerous festivals (including the internationally-renowned Art Basel), and a river clean enough to swim right through town in (and we do!). The Basel area is nestled next-door to both France and Germany, further expanding its international feel and the opportunity for international exploration with a few minutes’ travel. The city and area are bike-friendly and offer excellent short- and long-range public transport.

Contact:

Please email to E-Mail schreiben for informal questions.